Swiss EMBnet node server


Basic BLAST Sequence searches Advanced BLAST Sequence searches TMPRED Transmembrane regions detection LALIGN Alignments of 2 sequences PRSS Optimal score of an alignment COILS Coiled-coil domains prediction BOXSHADE Multiple alignments designer ClustalW Multiple sequence alignment (<30 seq) ClustalW-XXL Multiple sequence alignment (>30 seq) T-COFFEE and more on Vital-IT iPCR Virtual PCR tool EMBOSS/wEMBOSS package SRS7 searches at EBI Fetch get sequences FTP server Databases and software download STACK database FTP from ISREC via registration at SANBI	MyHits an interactive resource for protein annotation and domain identification PSI-Blast Search databases with a protein or a multiple alignment PatternFind Search a protein database with a pattern Motif scan Search a motif database with a protein sequence Dotlet 1.5 a Java applet for dotmatrix sequence comparisons ESTScan2 Search DNA sequences for coding regions MARCOIL Coiled-coil domains prediction PFRAMESCAN Frame tolerant Profile searches SAPS Statistical analysis of protein sequences EPD Eukaryotic Promoter Database Cleanex Expression Reference Database SSA Signal Search Analysis Tagger Scan for small tags within a genome

Next courses? Molecular Dynamics tutorial (by FTP here)	Available documents

The ExPASy server Swiss Institute of Bioinformatics Vital-IT infrastructure University of Lausanne University of Geneva Biozentrum Basel Swiss Center for Scientific Computing	EMBnet European Bioinformatics Institute (EBI) National Center for Biotechnology Information (NCBI) Japanese GenomeNet InterPro Integrated Resource of Protein Domains Briefings in Bioinformatics journal

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Last update: October 6, 2008