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Introduction to Sequence Analysis
Schedule and teachers
Location: The Multimedia and Videoconference Room
(Important: slides will be updated/modified before the courses !)
Time
Topic
Teacher
Mo Oct 01
DAY 1
08:45-09:00
Welcome Address
Sophia Kossida
09:00-10:30
Theory:
Biological Databases (slides)
Vassilios Ioannidis
10:45-12:00
Exercises:
Biological Databases (TP) (answers)
Staff
13:15-15:00
Theory:
Sequence comparisons: basic methods, scoring matrices, dot plots, pairwise alignments (slides)
Vassilios Ioannidis
15:15-17:30
Exercises:
Pairwise sequence comparisons, dotlet (TP) (answers)
Staff
Tu Oct 02
DAY 2
09:00-10:30
Theory:
Sequence comparisons: searches in databases (BLAST, FASTA) (slides)
Laurent Falquet
10:45-12:00
Exercises:
Sequence comparisons, searches with BLAST (TP)(answers)
Staff
13:15-15:00
Theory:
Multiple Alignments (slides) & patterns (slides)
Laurent Falquet
15:15-17:30
Exercises:
Web tools for creating multiple alignments (TP)
Staff
We Oct 03
DAY 3
09:00-10:30
Theory:
PSI-BLAST, Profiles and HMMs (slides)
Lorenzo Cerutti - VC*
(Laurent Falquet)
10:45-12:00
Exercises:
Patterns, Profiles and PSI-BLAST (TP) (answers)
Staff
13:15-15:00
Theory:
The wEMBOSS package (slides)
Valérie Ledent - VC*
(Laurent Falquet)
15:15-17:30
Exercises:
The wEMBOSS package (TP) (answers)
staff
VC*: these speakers will not be present in Athens physically but will perform their lecture from their home institution using the Marratech video conference tool.
Course evaluation form
Contact us
|
Time | Topic | Teacher | |
| Mo Oct 01 | DAY 1 | |||
| 08:45-09:00 | Welcome Address |
Sophia Kossida |
||
| 09:00-10:30 | Theory: Biological Databases (slides) |
Vassilios Ioannidis |
||
| 10:45-12:00 | Exercises: Biological Databases (TP) (answers) |
Staff |
||
| 13:15-15:00 | Theory: Sequence comparisons: basic methods, scoring matrices, dot plots, pairwise alignments (slides) |
Vassilios Ioannidis |
||
| 15:15-17:30 | Exercises: Pairwise sequence comparisons, dotlet (TP) (answers) |
Staff |
||
| Tu Oct 02 | DAY 2 | |||
| 09:00-10:30 | Theory: Sequence comparisons: searches in databases (BLAST, FASTA) (slides) |
Laurent Falquet |
||
| 10:45-12:00 | Exercises: Sequence comparisons, searches with BLAST (TP)(answers) |
Staff |
||
| 13:15-15:00 | Theory: Multiple Alignments (slides) & patterns (slides) |
Laurent Falquet |
||
| 15:15-17:30 | Exercises: Web tools for creating multiple alignments (TP) |
Staff |
||
| We Oct 03 | DAY 3 | |||
| 09:00-10:30 | Theory: PSI-BLAST, Profiles and HMMs (slides) |
Lorenzo Cerutti - VC* (Laurent Falquet) |
||
| 10:45-12:00 | Exercises: Patterns, Profiles and PSI-BLAST (TP) (answers) |
Staff |
||
| 13:15-15:00 | Theory: The wEMBOSS package (slides) |
Valérie Ledent - VC* (Laurent Falquet) |
||
| 15:15-17:30 | Exercises: The wEMBOSS package (TP) (answers) |
staff |
||
|
VC*: these speakers will not be present in Athens physically but will perform their lecture from their home institution using the Marratech video conference tool. |
Course evaluation form
Contact us