SIB GeneMatcher server thanks to
Usage:
Choose the the suitable GeneMatcher program and database for your query sequence. Changing the GenMatcher parameters and output parameters is optional.
Paste your sequence in one of the supported
formats
into the sequence field below and press the "Run GeneMatcher" button.
Make sure that the format button (next to the sequence field) shows the correct format .
BLAST
vs
FDF
(Smith-Waterman) or choosing the suitable algorithm.
Please select the program:
swp (PROT database vs. PROT query)
swx (PROT database vs. DNA query)
(
FDF help file
)
Please select the protein database:
non redundant
SwissProt
SwissProt/TrEMBL/TrEMBL_NEW
trest (Warning! Read help)
trgen (Warning! Read help)
Yeast (S. cerevisiae)
Bacteria
RefSeq
General FDF parameters
:
(See
FDF help file
for explanation)
xnu filter on/off (PROT)
blosum35
blosum45
blosum62
blosum80
blosum100
pam120
pam250
dayhoff
gonnet
identity
Select matrix (M)
seg filter on/off (PROT)
Plain Text
SwissProt ID or AC
TrEMBL ID
GenPept gi
EMBL ID or AC
EST ID or AC
Yeast ORF
RefSeq AC
Select format
Query title (option)
Paste your sequence here:
(or ID or accession number)
Regulating output:
None
50
100
150
200
Threshold (S) : filter to exclude low scoring results
0
10
20
50
100
250
500
Descriptions (V): Nr of one-line descriptions
0
10
20
50
100
250
500
Alignments (B): Nr of aligned results