find multiple matching subsegments in two sequences
This is William Pearson's lalign program. A manual page for this program is available here. The lalign program implements the algorithm of Huang and Miller, published in Adv. Appl. Math. (1991) 12:337-357.
This program is part of the FASTA package of sequence analysis program.
Usage: Paste your two sequences in one of the supported formats into the sequence fields below
and press the "Run lalign" button.
Make sure that both format buttons (next to the sequence fields) shows the correct formats